Communications, Chemistry, Information Theory, Systems Engineering
Information theory and signal processing methodology to identify nucleic acid-protein binding sequences in RNA-protein interactions
Harry Shaw*, Nagarajan Pattabiraman**, Deborah Preston†, Tatiana Ammosova ††, Yuri Obukhov††, Sergei Nekhai†† and Ajit Kumar**
*Telecommunication Networks and Technologies Branch, Staff Engineer, NASA/Goddard Space Flight Center, Greenbelt, MD
**Department of Biochemistry and Molecular Medicine, The George Washington University, Washington, DC
†University of Maryland, College Park, MD
††Department of Medicine, Howard University School of Medicine, Washington DC
2019 53rd Annual Conference on Information Sciences and Systems (CISS), pp. 1-6. IEEE, 2019
Model Setup
Setting up the data for the model: A description of the three field cases used in this paper and an example of coding RNA:protein sequence of GGCUCUG:GFDLNDFLEQLR
Protein Data Bank (PDB) structures from the calibration dataset visualized with Chimera
